STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RABGGTBGeranylgeranyl transferase type-2 subunit beta. (331 aa)    
Predicted Functional Partners:
RABGGTA
Geranylgeranyl transferase type-2 subunit alpha isoform X1.
    
 0.998
PTAR1
Protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X1.
    
 0.986
ENSPCIP00000003143
annotation not available
    
 0.953
ENSPCIP00000034016
Rab proteins geranylgeranyltransferase component A 1-like.
    
 0.953
PTP4A2
Protein tyrosine phosphatase type IVA 2.
    
 0.932
PTP4A1
LOW QUALITY PROTEIN: protein tyrosine phosphatase type IVA 1.
    
 0.932
RAB1B
RAB1B, member RAS oncogene family.
    
 0.868
RAB1A
Ras-related protein Rab-1A isoform X1.
    
 0.868
ENSPCIP00000012390
annotation not available
    
 0.853
YKT6
Synaptobrevin homolog YKT6 isoform X1.
    
 
 0.851
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.