STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCHS1LOW QUALITY PROTEIN: protocadherin-16. (3277 aa)    
Predicted Functional Partners:
DCHS2
LOW QUALITY PROTEIN: protocadherin-23.
  
  
 
0.903
JUP
LOW QUALITY PROTEIN: junction plakoglobin.
    
 0.657
CTNNB1
LOW QUALITY PROTEIN: catenin beta-1.
    
 0.657
LCMT1
[phosphatase 2A protein]-leucine-carboxy methyltransferase.
      
 0.645
CDHR5
Cadherin-related family member 5.
   
 0.581
PCDH15
Protocadherin-15 isoform X1.
   
0.581
MYO3A
Myosin-IIIa.
   
 0.511
FJX1
Four-jointed box protein 1.
   
 
 0.495
USH1C
USH1 protein network component harmonin.
   
 
 0.488
AQP8
Aquaporin-8.
   
  
 0.487
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.