Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DCHS1LOW QUALITY PROTEIN: protocadherin-16. (3277 aa)    
Predicted Functional Partners:
DCHS2
LOW QUALITY PROTEIN: protocadherin-23.
  
  
 
0.903
FAT4
LOW QUALITY PROTEIN: protocadherin Fat 4.
   
 
 0.719
CTNNB1
LOW QUALITY PROTEIN: catenin beta-1.
    
 0.673
LCMT1
[phosphatase 2A protein]-leucine-carboxy methyltransferase.
      
 0.653
JUP
LOW QUALITY PROTEIN: junction plakoglobin.
    
 0.633
FJX1
Four-jointed box protein 1.
   
 
 0.612
CRB1
Protein crumbs homolog 1.
    
 0.567
ARVCF
Armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X1.
    
 0.545
CTNND1
Catenin (cadherin-associated protein), delta 1.
    
 0.545
ENSPCIP00000033699
annotation not available
    
 0.545
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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