Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PATL1DNA topoisomerase 2-associated protein PAT1. (767 aa)    
Predicted Functional Partners:
LSM1
U6 snRNA-associated Sm-like protein LSm1 isoform X1.
    
 0.958
LSM2
U6 snRNA-associated Sm-like protein LSm2.
   
 0.946
LSM4
U6 snRNA-associated Sm-like protein LSm4.
    
 0.940
LSM7
U6 snRNA-associated Sm-like protein LSm7.
    
 0.938
DDX6
Probable ATP-dependent RNA helicase DDX6.
   
 0.930
LSM5
U6 snRNA-associated Sm-like protein LSm5.
   
 0.926
LSM6
U6 snRNA-associated Sm-like protein LSm6.
    
 0.915
LSM3
U6 snRNA-associated Sm-like protein LSm3.
    
 0.915
DCP2
M7GpppN-mRNA hydrolase isoform X1.
    
 0.901
EDC3
Enhancer of mRNA-decapping protein 3.
    
 0.894
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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