Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX55LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX55. (601 aa)    
Predicted Functional Partners:
FTSJ3
AdoMet-dependent rRNA methyltransferase SPB1.
   
 0.977
WDR12
Ribosome biogenesis protein WDR12 isoform X1.
   
 0.976
DDX54
ATP-dependent RNA helicase DDX54/DBP10.
  
 
0.960
GTPBP4
Nucleolar GTP-binding protein 1 isoform X1.
   
 
 0.958
WDR74
Ribosome biogenesis protein NSA1.
   
 
 0.955
PUM3
Pumilio homology domain family member 6.
   
 
 0.955
GNL2
Nucleolar GTP-binding protein 2.
  
 0.954
RSL24D1
Probable ribosome biogenesis protein RLP24.
   
 
 0.950
EBNA1BP2
Probable rRNA-processing protein EBP2.
   
 0.950
PES1
Pescadillo homolog.
   
 0.950
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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