Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LTV1Protein LTV1 homolog. (465 aa)    
Predicted Functional Partners:
NOB1
RNA-binding protein NOB1 isoform X1.
   
 0.999
TSR1
Pre-rRNA-processing protein TSR1 homolog isoform X1.
   
 0.998
BYSL
Essential nuclear protein 1.
   
 0.997
RIOK2
Serine/threonine-protein kinase RIO2.
   
 0.996
RIOK1
Serine/threonine-protein kinase RIO1 isoform X1.
   
 0.995
ENSPCIP00000022703
annotation not available
   
 0.980
KRR1
KRR1 small subunit processome component homolog.
   
 
 0.972
NOP14
Nucleolar protein 14.
   
 0.968
DIMT1
18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase.
   
 
 0.967
RIOK3
Serine/threonine-protein kinase RIO3 isoform X1.
   
 0.954
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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