Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX46LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46. (1031 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.982
U2SURP
U2 snRNP-associated SURP motif-containing protein isoform X1.
   
 0.967
SF3A1
LOW QUALITY PROTEIN: splicing factor 3A subunit 1.
   
 0.967
PHF5A
PHD finger-like domain-containing protein 5A.
    
 0.966
SF3B3
Splicing factor 3B subunit 3.
   
 0.964
SF3A2
Splicing factor 3A subunit 2.
   
 0.963
SF3A3
Splicing factor 3A subunit 3.
   
 0.962
SNRPA1
U2 small nuclear ribonucleoprotein A.
    
 0.962
SF3B2
Splicing factor 3B subunit 2 isoform X1.
   
 0.961
SF3B4
Splicing factor 3B subunit 4.
    
 0.955
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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