STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKD2Polycystin-2 isoform X1. (984 aa)    
Predicted Functional Partners:
PKD1
LOW QUALITY PROTEIN: polycystin-1.
    
0.980
PKD1L2
LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2.
    
 
0.817
TRPC1
Transient receptor potential cation channel subfamily C member 1.
    
 
 0.739
IBSP
Integrin binding sialoprotein.
    
 
 0.727
PKHD1
Fibrocystin isoform X1.
      
 0.697
PKDREJ
Polycystic kidney disease and receptor for egg jelly-related protein.
    
0.693
EXOC5
Exocyst complex component 5.
     
 0.687
TRPV4
LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily V member 4.
      
 0.658
ARL13B
ADP-ribosylation factor-like protein 13B isoform X1.
      
 0.602
RHO
Rhodopsin.
     
 0.576
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.