STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPHS2Podocin. (424 aa)    
Predicted Functional Partners:
TJP1
Tight junction protein ZO-1 isoform X1.
     
 0.778
CD2AP
CD2 associated protein.
   
 
 0.748
TRPC6
Transient receptor potential cation channel subfamily C member 6.
    
 
 0.742
NPHS1
Nephrin isoform X1.
    
 0.736
KIRREL1
Kin of IRRE-like protein 1 isoform X1.
    
 0.725
SYNPO
LOW QUALITY PROTEIN: synaptopodin.
     
 0.671
BCS1L
Mitochondrial chaperone BCS1 isoform X1.
   
 0.630
AFG3L2
AFG3-like protein 2 isoform X1.
   
 0.630
ENSPCIP00000033249
AFG3-like protein 1 isoform X1.
   
 0.630
SPG7
Paraplegin isoform X1.
   
 0.630
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.