Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SND1Staphylococcal nuclease domain-containing protein 1. (910 aa)    
Predicted Functional Partners:
LRRC59
Leucine-rich repeat-containing protein 59.
   
 
 0.900
RPS20
LOW QUALITY PROTEIN: 40S ribosomal protein S20.
    
   0.821
NUDCD1
NudC domain-containing protein 1 isoform X1.
    
   0.797
DHX9
ATP-dependent RNA helicase A isoform X1.
   
 0.780
HDLBP
Vigilin.
   
  
 0.778
GANAB
Mannosyl-oligosaccharide alpha-1,3-glucosidase.
   
  
 0.743
ENSPCIP00000006082
annotation not available
    
 
 0.725
AXL
Tyrosine-protein kinase receptor UFO isoform X1.
   
 0.725
ENSPCIP00000025513
annotation not available
    
 
 0.725
RPS9
Small subunit ribosomal protein S9e.
    
 
 0.725
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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