Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPS20LOW QUALITY PROTEIN: 40S ribosomal protein S20. (120 aa)    
Predicted Functional Partners:
RPS17
Small subunit ribosomal protein S17e.
   
 0.999
RPS7
LOW QUALITY PROTEIN: 40S ribosomal protein S7.
   
 0.999
RPL4
Large subunit ribosomal protein L4e.
  
 0.998
RPL5
60S ribosomal protein L5 isoform X1.
  
 
 0.998
RPL6
Large subunit ribosomal protein L6e.
  
 
 0.998
RPS16
Small subunit ribosomal protein S16e.
  
 0.996
ENSPCIP00000041877
annotation not available
  
 0.996
ENSPCIP00000030150
annotation not available
  
 0.995
RPS5
Small subunit ribosomal protein S5e.
  
 0.995
ENSPCIP00000036563
annotation not available
   
 0.995
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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