Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FOXF2LOW QUALITY PROTEIN: forkhead box protein F2. (463 aa)    
Predicted Functional Partners:
HOXB6
Homeobox protein HoxA/B/C6.
   
 0.624
GATA4
Transcription factor GATA-4.
   
 0.536
GATA6
Transcription factor GATA-6 isoform X1.
   
 0.518
NKX3-2
Homeobox protein Nkx-3.2.
   
 0.495
GATA5
Transcription factor GATA-5 isoform X1.
   
 0.461
NKX2-5
Homeobox protein Nkx-2.5.
    
 0.446
BMP4
Bone morphogenetic protein 4 isoform X1.
     
 0.432
BMP2
Bone morphogenetic protein 2.
     
 0.432
BARX1
Homeobox protein BarH-like 1 isoform X1.
    
 0.424
SHH
Sonic hedgehog protein.
     
 0.404
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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