Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ERCC3TFIIH basal transcription factor complex helicase XPB subunit isoform X1. (783 aa)    
Predicted Functional Partners:
GTF2H5
TFIIH basal transcription factor complex TTD-A subunit.
    
 0.998
GTF2H1
LOW QUALITY PROTEIN: general transcription factor IIH subunit 1.
   
 0.997
GTF2H3
General transcription factor IIH subunit 3 isoform X1.
   
 0.997
ERCC2
TFIIH basal transcription factor complex helicase XPD subunit isoform X1.
   
 0.996
GTF2H4
General transcription factor IIH subunit 4.
  
 0.994
XPA
DNA repair protein complementing XP-A cells isoform X1.
    
 0.994
GTF2H2
General transcription factor IIH subunit 2 isoform X1.
    
 0.993
MNAT1
LOW QUALITY PROTEIN: CDK-activating kinase assembly factor MAT1.
    
 0.991
CCNH
Cyclin H.
    
 0.991
CDK7
Cyclin-dependent kinase 7 isoform X1.
    
 0.990
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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