Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM8ARNA-binding protein 8A. (174 aa)    
Predicted Functional Partners:
CASC3
Protein CASC3.
   
 0.991
EIF4A3
Eukaryotic initiation factor 4A-III.
   
 0.989
SRSF1
Splicing factor, arginine/serine-rich 1.
   
 0.979
UPF1
LOW QUALITY PROTEIN: regulator of nonsense transcripts 1.
    
 0.979
ENSPCIP00000044283
Protein mago nashi homolog.
   
 0.971
MAGOH
Protein mago nashi homolog.
   
 0.971
PYM1
Partner of Y14 and mago isoform X1.
    
 0.970
ALYREF
THO complex subunit 4.
   
 0.968
SAP18
Histone deacetylase complex subunit SAP18.
   
 0.967
ENSPCIP00000050345
annotation not available
   
 0.958
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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