STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM8ARNA-binding protein 8A. (174 aa)    
Predicted Functional Partners:
EIF4A3
Eukaryotic initiation factor 4A-III.
   
 0.999
PYM1
Partner of Y14 and mago isoform X1.
    
 0.999
CASC3
Protein CASC3.
   
 0.999
ENSPCIP00000044283
Protein mago nashi homolog.
   
 0.995
MAGOH
Protein mago nashi homolog.
   
 0.995
UPF1
LOW QUALITY PROTEIN: regulator of nonsense transcripts 1.
    
 0.981
SRSF1
Splicing factor, arginine/serine-rich 1.
   
 0.976
SMG1
Serine/threonine-protein kinase SMG1 isoform X1.
    
 
 0.967
ENSPCIP00000021240
annotation not available
   
 0.964
RNPS1
RNA-binding protein with serine-rich domain 1 isoform X1.
   
0.964
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.