STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE4AUbiquitin conjugation factor E4 A isoform X1. (1068 aa)    
Predicted Functional Partners:
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 0.943
UFD1
Ubiquitin fusion degradation protein 1 homolog.
    
 
 0.937
YOD1
YOD1 deubiquitinase.
    
 
 0.924
VCP
Transitional endoplasmic reticulum ATPase isoform X1.
  
 
 0.829
NPLOC4
Nuclear protein localization protein 4 homolog isoform X1.
    
 
 0.804
FAAP100
Fanconi anemia core complex-associated protein 100 isoform X1.
    
 
 0.804
RAD23B
UV excision repair protein RAD23 homolog B isoform X1.
   
 0.753
ENSPCIP00000015824
annotation not available
   
 0.753
RAD23A
UV excision repair protein RAD23 homolog A isoform X1.
   
 0.753
SPATA5L1
Spermatogenesis associated 5 like 1.
  
 
 0.736
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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