STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF38E3 ubiquitin-protein ligase RNF38 isoform X1. (617 aa)    
Predicted Functional Partners:
UBC
LOW QUALITY PROTEIN: polyubiquitin-C.
    
 0.718
ENSPCIP00000043051
LOW QUALITY PROTEIN: polyubiquitin-C-like.
    
 0.718
UBE2K
Ubiquitin-conjugating enzyme (huntingtin interacting protein 2).
   
 0.680
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.673
ENSPCIP00000040403
annotation not available
    
 0.673
ENSPCIP00000045070
annotation not available
    
 0.673
SMAD7
Mothers against decapentaplegic homolog 7.
   
 0.500
SMAD6
Mothers against decapentaplegic homolog 6.
   
 0.496
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 
 0.492
ENSPCIP00000005252
annotation not available
      
 0.461
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.