STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)    
Predicted Functional Partners:
SNRNP40
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.999
PRPF6
Pre-mRNA-processing factor 6.
   
 0.999
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.999
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.999
SNRPD1
Small nuclear ribonucleoprotein Sm D1 isoform X1.
   
 0.997
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.996
DDX23
Probable ATP-dependent RNA helicase DDX23.
   
 0.996
SART1
LOW QUALITY PROTEIN: U4/U6.U5 tri-snRNP-associated protein 1.
    
 0.994
XAB2
Pre-mRNA-splicing factor SYF1.
   
 
 0.994
CDC5L
Cell division cycle 5-like protein.
   
 
 0.994
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.