STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNPOLOW QUALITY PROTEIN: synaptopodin. (716 aa)    
Predicted Functional Partners:
ACTB
Actin, cytoplasmic 1.
   
 0.925
ACTG1
Actin, cytoplasmic 2.
   
 0.925
SUOX
Sulfite oxidase, mitochondrial.
      
 0.727
NPHS1
Nephrin isoform X1.
     
 0.689
NPHS2
Podocin.
     
 0.671
CD2AP
CD2 associated protein.
    
 0.665
PRRC1
LOW QUALITY PROTEIN: protein PRRC1.
      
 0.624
NDFIP1
Nedd4 family interacting protein 1.
      
 0.621
PFN2
Profilin 2.
    
 0.608
ENSPCIP00000015536
annotation not available
    
 0.608
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.