STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A2Collagen alpha-2(VI) chain isoform X1. (1020 aa)    
Predicted Functional Partners:
COL6A1
Collagen alpha-1(VI) chain.
  
0.983
COL1A1
Collagen alpha-1(I) chain.
  
0.899
COL1A2
Collagen alpha-2(I) chain.
  
0.836
ITGA1
Integrin alpha-1 isoform X1.
   
 
 0.821
COL3A1
Collagen alpha-1(III) chain isoform X1.
  
0.804
COL6A3
Collagen type VI alpha 3 chain.
   
0.785
ITGA5
Integrin alpha 5.
   
 0.776
ITGA8
Integrin alpha-8 isoform X1.
   
 0.775
ITGA6
Integrin alpha-6 isoform X1.
   
 0.771
ITGB5
Integrin beta 5.
    
 0.750
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.