STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM16LOW QUALITY PROTEIN: tripartite motif-containing protein 16. (556 aa)    
Predicted Functional Partners:
RBX1
E3 ubiquitin-protein ligase RBX1.
    
 0.835
CUL1
Cullin 1.
    
 0.787
CUL3
Cullin 3.
    
 0.749
ENSPCIP00000026820
annotation not available
    
 0.723
SKP1
S-phase kinase-associated protein 1.
    
 0.723
ENSPCIP00000039170
annotation not available
    
 0.723
CDC6
LOW QUALITY PROTEIN: cell division control protein 6 homolog.
    
 0.665
TRIM42
Tripartite motif-containing protein 42 isoform X1.
      
 0.621
MRPL2
39S ribosomal protein L2, mitochondrial isoform X1.
    
 0.605
UBC
LOW QUALITY PROTEIN: polyubiquitin-C.
   
 0.576
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.