STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC97Coiled-coil domain-containing protein 97 isoform X1. (345 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3B subunit 1 isoform X1.
    
 
 0.855
SF3B3
Splicing factor 3B subunit 3.
    
 
 0.825
ENSPCIP00000020854
annotation not available
    
 
 0.793
SF3B6
Pre-mRNA branch site protein p14.
    
 
 0.793
ENSPCIP00000014525
Splicing factor 3B subunit 5.
    
 
 0.769
ENSPCIP00000033712
Splicing factor 3B subunit 5-like.
    
 
 0.769
SF3B4
Splicing factor 3B subunit 4.
    
 
 0.650
SF3A2
Splicing factor 3A subunit 2.
   
 
 0.649
SF3A1
LOW QUALITY PROTEIN: splicing factor 3A subunit 1.
   
 
 0.641
CHERP
Calcium homeostasis endoplasmic reticulum protein isoform X1.
   
 
 0.617
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.