STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM98BLOW QUALITY PROTEIN: protein FAM98B. (479 aa)    
Predicted Functional Partners:
DDX1
ATP-dependent RNA helicase DDX1 isoform X1.
   
 0.927
RTRAF
RNA transcription, translation and transport factor.
    
 0.925
RTCB
TRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase).
    
 0.908
C2orf49
Ashwin.
   
 0.889
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.751
KDM6A
Lysine-specific demethylase 6A isoform X1.
    
 0.698
TRPT1
LOW QUALITY PROTEIN: tRNA 2'-phosphotransferase 1.
      
 0.634
KDM6B
Lysine-specific demethylase 6B.
    
 0.597
C15orf41
Uncharacterized protein C15orf41 homolog isoform X1.
    
 
 0.562
ZBTB8OS
Protein archease isoform X1.
    
 0.560
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.