STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SETXLOW QUALITY PROTEIN: probable helicase senataxin. (2718 aa)    
Predicted Functional Partners:
SCAF8
Protein SCAF8 isoform X1.
   
 
 0.940
SCAF4
Splicing factor, arginine/serine-rich 15 isoform X1.
   
 
 0.939
POLR2A
LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1.
   
 
 0.911
SUPT5H
LOW QUALITY PROTEIN: transcription elongation factor SPT5.
    
 
 0.765
NIPBL
LOW QUALITY PROTEIN: nipped-B-like protein.
   
    0.725
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
   
  
 0.710
EXOSC10
Exosome complex exonuclease RRP6.
    
 
 0.702
ENSPCIP00000051590
annotation not available
    
 
 0.697
BRCA1
Breast cancer type 1 susceptibility protein isoform X1.
    
 
 0.697
DROSHA
Ribonuclease 3 isoform X1.
   
 
 0.695
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.