STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPATA5L1Spermatogenesis associated 5 like 1. (697 aa)    
Predicted Functional Partners:
UBXN7
UBX domain-containing protein 7.
   
 0.999
UFD1
Ubiquitin fusion degradation protein 1 homolog.
    
 0.941
DERL1
Derlin-1.
   
 0.935
YOD1
YOD1 deubiquitinase.
   
 0.917
UBXN1
UBX domain-containing protein 1/4.
   
 0.901
PLAA
LOW QUALITY PROTEIN: phospholipase A-2-activating protein.
   
 
 0.859
NPLOC4
Nuclear protein localization protein 4 homolog isoform X1.
   
 0.849
FAAP100
Fanconi anemia core complex-associated protein 100 isoform X1.
   
 0.849
DERL3
Derlin-3 isoform X1.
   
 0.831
DERL2
Derlin-2/3.
   
 0.831
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.