STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPCIP00000027138annotation not available (921 aa)    
Predicted Functional Partners:
ZGRF1
Protein ZGRF1 isoform X1.
 
      0.881
SMG5
Protein SMG5 isoform X1.
   
 0.840
ENSPCIP00000026135
annotation not available
    
 0.837
UPF3B
Regulator of nonsense transcripts 3B.
    
 0.837
SMG7
Protein SMG7 isoform X1.
   
 0.835
SMG6
LOW QUALITY PROTEIN: telomerase-binding protein EST1A.
   
 0.835
CASC3
Protein CASC3.
    
 0.818
RBM8A
RNA-binding protein 8A.
    
 0.806
ENSPCIP00000039761
annotation not available
    
 0.794
NCBP1
Nuclear cap-binding protein subunit 1.
    
 0.788
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.