STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG9Protein SMG9 isoform X1. (629 aa)    
Predicted Functional Partners:
SMG8
LOW QUALITY PROTEIN: protein SMG8.
    
 0.998
SMG1
Serine/threonine-protein kinase SMG1 isoform X1.
    
 0.987
SMG5
Protein SMG5 isoform X1.
   
 
 0.858
SMG6
LOW QUALITY PROTEIN: telomerase-binding protein EST1A.
   
 
 0.853
SMG7
Protein SMG7 isoform X1.
   
 
 0.847
MTOR
LOW QUALITY PROTEIN: serine/threonine-protein kinase mTOR.
    
 0.784
ENSPCIP00000005115
annotation not available
    
 0.784
PRKDC
LOW QUALITY PROTEIN: DNA-dependent protein kinase catalytic subunit.
    
 0.784
RBM8A
RNA-binding protein 8A.
    
 
 0.742
UPF1
LOW QUALITY PROTEIN: regulator of nonsense transcripts 1.
    
 
 0.720
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.