STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF121RING finger protein 121/175. (326 aa)    
Predicted Functional Partners:
RNF5
E3 ubiquitin-protein ligase RNF5.
 
    
 0.776
RNF185
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF185.
 
    
 0.770
MARCHF6
E3 ubiquitin-protein ligase MARCH6 isoform X1.
      
 0.562
EXD3
Exonuclease mut-7 homolog isoform X1.
      
 0.555
DBF4B
Protein DBF4 homolog B.
      
 0.555
VPS33B
Vacuolar protein sorting-associated protein 33B isoform X1.
   
    0.540
ALKBH6
alkB homolog 6.
      
 0.515
NSRP1
Nuclear speckle splicing regulatory protein 1.
      
 0.468
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1.
 
      0.465
RNF31
E3 ubiquitin-protein ligase RNF31.
      
 0.461
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.