STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP25Ubiquitin carboxyl-terminal hydrolase 25 isoform X1. (1118 aa)    
Predicted Functional Partners:
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
 
 0.850
DDX58
Probable ATP-dependent RNA helicase DDX58 isoform X1.
   
 
 0.725
CLSPN
Claspin.
    
 0.715
UBC
LOW QUALITY PROTEIN: polyubiquitin-C.
   
 0.701
ENSPCIP00000043051
LOW QUALITY PROTEIN: polyubiquitin-C-like.
   
 0.701
USP13
Ubiquitin carboxyl-terminal hydrolase 5/13.
   
 
 0.680
USP7
Ubiquitin carboxyl-terminal hydrolase 7.
   
0.676
RPS27A
Ubiquitin-small subunit ribosomal protein S27Ae.
   
 0.645
ENSPCIP00000040403
annotation not available
   
 0.645
ENSPCIP00000045070
annotation not available
   
 0.645
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.