STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB1ARas-related protein Rab-1A isoform X1. (232 aa)    
Predicted Functional Partners:
TRAPPC1
Trafficking protein particle complex subunit 1 isoform X1.
    
 0.954
TRAPPC8
Trafficking protein particle complex subunit 8 isoform X1.
    
 0.945
C9orf72
Guanine nucleotide exchange protein C9orf72.
    
 0.930
USO1
General vesicular transport factor p115 isoform X1.
   
 0.927
TRAPPC3
Trafficking protein particle complex subunit 3 isoform X1.
   
 0.873
TRAPPC3L
Trafficking protein particle complex subunit 3-like protein isoform X1.
   
 0.873
STX5
Syntaxin 5.
    
 0.872
TRAPPC6B
Trafficking protein particle complex subunit 6B.
   
 0.857
RABGGTB
Geranylgeranyl transferase type-2 subunit beta.
    
 0.851
ENSPCIP00000027549
LOW QUALITY PROTEIN: rab GDP dissociation inhibitor alpha-like.
   
 0.840
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.