STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPTXRLOW QUALITY PROTEIN: neuronal pentraxin receptor. (270 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.775
PHC2
Polyhomeotic-like protein 2 isoform X1.
    
 0.701
CBX8
Chromobox protein homolog 8.
 
  
 0.693
RNF2
E3 ubiquitin-protein ligase RNF1/2.
    
 0.690
PCGF2
Polycomb group RING finger protein 2 isoform X1.
    
 0.662
BMI1
Polycomb group RING finger protein 4.
    
 0.634
CBX4
E3 SUMO-protein ligase CBX4.
    
 0.599
PHC1
LOW QUALITY PROTEIN: polyhomeotic-like protein 1.
    
 0.593
PCGF1
Polycomb group RING finger protein 1 isoform X1.
    
 0.585
EED
Embryonic ectoderm development.
    
 0.564
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.