STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NESNestin isoform X1. (1793 aa)    
Predicted Functional Partners:
DCX
Neuronal migration protein doublecortin isoform X1.
      
 0.712
ENSPCIP00000019710
annotation not available
    
 
0.707
RBFOX3
RNA binding fox-1 homolog 3.
    
 
 0.682
VIM
LOW QUALITY PROTEIN: vimentin.
    
 
0.641
SYNM
LOW QUALITY PROTEIN: synemin.
    
0.598
TBR1
T-box brain protein 1.
      
 0.592
NOTCH1
LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 1.
    
 0.589
PVALB
Parvalbumin alpha.
    
 
 0.582
FOXG1
LOW QUALITY PROTEIN: forkhead box protein G1.
    
 0.577
PDGFRA
Platelet-derived growth factor receptor alpha.
      
 0.577
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.