STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF3PHD finger protein 3 isoform X1. (2022 aa)    
Predicted Functional Partners:
NIPBL
LOW QUALITY PROTEIN: nipped-B-like protein.
   
  
 0.832
POLR2A
LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1.
    
 0.795
POLR2E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1.
    
  0.711
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
    
  0.654
POLR2B
DNA-directed RNA polymerase II subunit RPB2.
   
 0.629
TRIP12
E3 ubiquitin-protein ligase TRIP12 isoform X1.
   
  
 0.621
POLR2J
DNA-directed RNA polymerase II subunit RPB11-a.
    
 0.615
USP34
Ubiquitin carboxyl-terminal hydrolase 34 isoform X1.
   
 
  0.604
ENSPCIP00000015147
annotation not available
    
  0.603
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 isoform X1.
    
  0.603
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.