STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM4BRNA-binding protein 4B isoform X1. (652 aa)    
Predicted Functional Partners:
TAF6L
Transcription initiation factor TFIID subunit 6.
   
  
 0.594
EIF2A
Eukaryotic translation initiation factor 2A.
   
    0.559
TFAP4
Transcription factor AP-4 isoform X1.
      
 0.547
RUNX3
LOW QUALITY PROTEIN: runt-related transcription factor 3.
    
  0.541
RUNX2
Runt-related transcription factor 2 isoform X1.
    
  0.541
RUNX1
Runt-related transcription factor 1 isoform X1.
    
  0.541
TSEN34
LOW QUALITY PROTEIN: tRNA-splicing endonuclease subunit Sen34.
      
 0.461
SRSF1
Splicing factor, arginine/serine-rich 1.
   
 
0.444
TAF6
Transcription initiation factor TFIID subunit 6 isoform X1.
   
  
 0.431
MAATS1
Cilia- and flagella-associated protein 91 isoform X1.
    
 
 0.429
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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