STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG4BCysteine protease ATG4B isoform X1. (401 aa)    
Predicted Functional Partners:
GABARAPL2
Gamma-aminobutyric acid receptor-associated protein-like 2.
   
 0.993
GABARAPL1
Gamma-aminobutyric acid receptor-associated protein-like 1.
   
 0.986
GABARAP
Gamma-aminobutyric acid receptor-associated protein.
   
 0.986
ATG4D
Cysteine protease ATG4D isoform X1.
     
0.919
ATG4A
Cysteine protease ATG4A isoform X1.
  
  
0.917
ENSPCIP00000050004
annotation not available
   
 0.871
ULK1
Serine/threonine-protein kinase ULK1 isoform X1.
   
 
 0.855
ULK2
Serine/threonine-protein kinase ULK2 isoform X1.
   
 
 0.855
MAP1LC3B
Microtubule-associated proteins 1A/1B light chain 3B.
   
 0.824
ENSPCIP00000026418
annotation not available
   
 0.824
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.