STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUPT6HLOW QUALITY PROTEIN: transcription elongation factor SPT6. (1797 aa)    
Predicted Functional Partners:
IWS1
Protein IWS1 homolog isoform X1.
   
 0.999
LEO1
RNA polymerase-associated protein LEO1.
   
 0.997
POLR2A
LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1.
   
 0.994
SUPT5H
LOW QUALITY PROTEIN: transcription elongation factor SPT5.
   
 0.993
SUPT16H
FACT complex subunit SPT16.
   
 0.990
SSRP1
Structure-specific recognition protein 1.
   
 0.988
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
    
 0.972
CTR9
RNA polymerase-associated protein CTR9 homolog.
   
 0.972
POLR2G
DNA-directed RNA polymerase II subunit RPB7.
    
 0.960
RTF1
RNA polymerase-associated protein RTF1 homolog.
   
 
 0.959
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.