STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAVIN1Polymerase I and transcript release factor. (388 aa)    
Predicted Functional Partners:
CAV1
Caveolin-1 isoform X1.
   
 0.891
CAV3
Caveolin 3.
   
 0.807
CAV2
Caveolin 2.
   
 0.786
EHD2
LOW QUALITY PROTEIN: EH domain-containing protein 2.
   
  
 0.643
CAVIN3
Protein kinase C delta-binding protein.
   
 
0.633
TTF1
LOW QUALITY PROTEIN: transcription termination factor 1.
    
 0.627
TAF1C
TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1.
  
  
  0.605
AKAP12
A-kinase anchor protein 12.
   
  
 0.587
EGFR
Epidermal growth factor receptor isoform X1.
   
 
 0.585
POLR1A
DNA-directed RNA polymerase I subunit RPA1.
     
 0.558
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.