STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC22BVesicle-trafficking protein SEC22b. (309 aa)    
Predicted Functional Partners:
STX5
Syntaxin 5.
   
 0.999
GOSR2
Golgi SNAP receptor complex member 2 isoform X1.
    
 0.999
BET1
Blocked early in transport 1.
   
 0.997
STX18
Syntaxin 18.
   
 0.997
USE1
Unconventional SNARE in the endoplasmic reticulum protein 1.
    
 0.995
BNIP1
Vesicle transport protein SEC20 isoform X1.
   
 0.990
BET1L
Blocked early in transport 1.
   
 0.985
YKT6
Synaptobrevin homolog YKT6 isoform X1.
    
0.978
SCFD1
Sec1 family domain-containing protein 1 isoform X1.
   
 0.977
SEC24A
SEC24 homolog A, COPII coat complex component.
    
 0.969
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.