STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK03858.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.618
SDK03885.1
Glutamate or tyrosine decarboxylase.
       0.605
SDK04388.1
YggT family protein.
  
     0.600
SDK04418.1
DivIVA domain-containing protein.
  
     0.587
SDK03798.1
Serine/threonine protein kinase.
     
 0.583
SDK03831.1
LysM repeat-containing protein.
       0.581
SDK16298.1
NAD-dependent protein deacetylase, SIR2 family.
   
    0.574
SDK62901.1
Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains.
  
     0.561
SDK13851.1
Protein of unknown function.
  
     0.559
crgA
Uncharacterised protein family (UPF0233); Involved in cell division; Belongs to the CrgA family.
  
     0.547
Your Current Organism:
Cryobacterium psychrotolerans
NCBI taxonomy Id: 386301
Other names: C. psychrotolerans, CGMCC 1.5382, Cryobacterium psychrotolerans Zhang et al. 2007, Cryobacterium sp. 0549, JCM 13925, strain 0549
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.