STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK36192.1Transcriptional regulator, XRE family with cupin sensor. (179 aa)    
Predicted Functional Partners:
SDK35591.1
Predicted ABC-type ATPase.
    
   0.633
SDK35839.1
Kynurenine formamidase.
  
    0.571
SDK36220.1
Selenocysteine lyase/Cysteine desulfurase.
       0.547
SDK44056.1
Serine/threonine-protein kinase HipA.
   
   0.441
SDL02486.1
Serine/threonine-protein kinase HipA.
   
   0.441
SDL02537.1
Hypothetical protein.
   
   0.441
SDK36038.1
2-aminobenzoate-CoA ligase.
   
   0.410
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
   
   0.410
SDK49137.1
propionyl-CoA synthetase.
   
   0.410
acsA-2
acetyl-CoA synthetase.
   
   0.410
Your Current Organism:
Cryobacterium psychrotolerans
NCBI taxonomy Id: 386301
Other names: C. psychrotolerans, CGMCC 1.5382, Cryobacterium psychrotolerans Zhang et al. 2007, Cryobacterium sp. 0549, JCM 13925, strain 0549
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