Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDK67515.1 | rnc | SAMN05216282_11042 | SAMN05216282_11040 | Uncharacterized protein. | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.928 |
| SDK67515.1 | rplA | SAMN05216282_11042 | SAMN05216282_108130 | Uncharacterized protein. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.885 |
| SDK67515.1 | rplJ | SAMN05216282_11042 | SAMN05216282_1209 | Uncharacterized protein. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.846 |
| SDK67515.1 | rplK | SAMN05216282_11042 | SAMN05216282_108129 | Uncharacterized protein. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.889 |
| SDK67515.1 | rplM | SAMN05216282_11042 | SAMN05216282_104156 | Uncharacterized protein. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.844 |
| SDK67515.1 | rplU | SAMN05216282_11042 | SAMN05216282_11185 | Uncharacterized protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.834 |
| SDK67515.1 | rpmF | SAMN05216282_11042 | SAMN05216282_11041 | Uncharacterized protein. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.987 |
| SDK67515.1 | rpsB | SAMN05216282_11042 | SAMN05216282_1318 | Uncharacterized protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.835 |
| SDK67515.1 | rpsC | SAMN05216282_11042 | SAMN05216282_104181 | Uncharacterized protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.957 |
| SDK67515.1 | rpsF | SAMN05216282_11042 | SAMN05216282_105171 | Uncharacterized protein. | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.860 |
| rnc | SDK67515.1 | SAMN05216282_11040 | SAMN05216282_11042 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Uncharacterized protein. | 0.928 |
| rnc | rplA | SAMN05216282_11040 | SAMN05216282_108130 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.756 |
| rnc | rplK | SAMN05216282_11040 | SAMN05216282_108129 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.916 |
| rnc | rplM | SAMN05216282_11040 | SAMN05216282_104156 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.941 |
| rnc | rplU | SAMN05216282_11040 | SAMN05216282_11185 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.854 |
| rnc | rpmF | SAMN05216282_11040 | SAMN05216282_11041 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.988 |
| rnc | rpsB | SAMN05216282_11040 | SAMN05216282_1318 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.922 |
| rnc | rpsF | SAMN05216282_11040 | SAMN05216282_105171 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.934 |
| rplA | SDK67515.1 | SAMN05216282_108130 | SAMN05216282_11042 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Uncharacterized protein. | 0.885 |
| rplA | rnc | SAMN05216282_108130 | SAMN05216282_11040 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.756 |
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