STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK82532.1ABC-2 type transport system permease protein. (524 aa)    
Predicted Functional Partners:
SDK82499.1
ABC-2 type transport system ATP-binding protein.
 
    0.958
SDK82567.1
Protein of unknown function.
       0.721
SDL06596.1
CheA signal transduction histidine kinase.
    
  0.638
SDK95059.1
Two component transcriptional regulator, LuxR family.
  
  0.540
SDK24350.1
Hypothetical protein.
  
     0.507
SDK42416.1
Two component transcriptional regulator, LuxR family.
   
  0.467
SDK42614.1
Regulatory protein, luxR family.
   
  0.467
SDK53092.1
Two component transcriptional regulator, LuxR family.
   
  0.467
SDK49339.1
Two component transcriptional regulator, LuxR family.
   
  0.467
SDK91719.1
Hypothetical protein.
   
  0.467
Your Current Organism:
Cryobacterium psychrotolerans
NCBI taxonomy Id: 386301
Other names: C. psychrotolerans, CGMCC 1.5382, Cryobacterium psychrotolerans Zhang et al. 2007, Cryobacterium sp. 0549, JCM 13925, strain 0549
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.