STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK60621.1Prephenate dehydratase, putative; Identified by match to protein family HMM PF01842. (144 aa)    
Predicted Functional Partners:
ABK62366.1
Prephenate dehydratase, putative.
     0.988
ABK62561.1
Prephenate dehydrogenase; Identified by match to protein family HMM PF02153.
 
 
 0.942
ABK61325.1
ACT domain protein pheB; Identified by match to protein family HMM PF01842; Belongs to the UPF0735 family.
  
 
 0.931
ABK62559.1
Chorismate mutase; Identified by match to protein family HMM PF01817; match to protein family HMM TIGR01805.
  
 
 0.913
hisC
Histidinol-phosphate aminotransferase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
 0.910
ABK62375.1
Aspartate aminotransferase; Identified by match to protein family HMM PF00155.
  
 
  0.902
ABK61132.1
Aspartate transaminase; Identified by match to protein family HMM PF00155.
  
 
  0.902
ABK61562.1
Aspartate aminotransferase.
  
 
  0.902
hisF
Imidazole glycerol phosphate synthase subunit HisF; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP; Belongs to the PRA-CH family.
  
  
 0.533
ABK61128.1
ISBma2, transposase.
       0.460
Your Current Organism:
Clostridium novyi
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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