Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK61070.1 | ABK61667.1 | NT01CX_0755 | NT01CX_1258 | Identified by match to protein family HMM PF04172. | Sensory transduction protein lytT; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. | 0.682 |
ABK61070.1 | ABK61714.1 | NT01CX_0755 | NT01CX_0754 | Identified by match to protein family HMM PF04172. | Identified by match to protein family HMM PF03788. | 0.993 |
ABK61070.1 | ABK62631.1 | NT01CX_0755 | NT01CX_0753 | Identified by match to protein family HMM PF04172. | SAM-dependent methyltransferase. | 0.530 |
ABK61070.1 | rsmI | NT01CX_0755 | NT01CX_0752 | Identified by match to protein family HMM PF04172. | Tetrapyrrole (Corrin/Porphyrin) Methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.499 |
ABK61667.1 | ABK61070.1 | NT01CX_1258 | NT01CX_0755 | Sensory transduction protein lytT; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. | Identified by match to protein family HMM PF04172. | 0.682 |
ABK61714.1 | ABK61070.1 | NT01CX_0754 | NT01CX_0755 | Identified by match to protein family HMM PF03788. | Identified by match to protein family HMM PF04172. | 0.993 |
ABK61714.1 | ABK62631.1 | NT01CX_0754 | NT01CX_0753 | Identified by match to protein family HMM PF03788. | SAM-dependent methyltransferase. | 0.530 |
ABK61714.1 | rsmI | NT01CX_0754 | NT01CX_0752 | Identified by match to protein family HMM PF03788. | Tetrapyrrole (Corrin/Porphyrin) Methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.499 |
ABK62631.1 | ABK61070.1 | NT01CX_0753 | NT01CX_0755 | SAM-dependent methyltransferase. | Identified by match to protein family HMM PF04172. | 0.530 |
ABK62631.1 | ABK61714.1 | NT01CX_0753 | NT01CX_0754 | SAM-dependent methyltransferase. | Identified by match to protein family HMM PF03788. | 0.530 |
ABK62631.1 | rsmI | NT01CX_0753 | NT01CX_0752 | SAM-dependent methyltransferase. | Tetrapyrrole (Corrin/Porphyrin) Methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.918 |
rsmI | ABK61070.1 | NT01CX_0752 | NT01CX_0755 | Tetrapyrrole (Corrin/Porphyrin) Methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | Identified by match to protein family HMM PF04172. | 0.499 |
rsmI | ABK61714.1 | NT01CX_0752 | NT01CX_0754 | Tetrapyrrole (Corrin/Porphyrin) Methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | Identified by match to protein family HMM PF03788. | 0.499 |
rsmI | ABK62631.1 | NT01CX_0752 | NT01CX_0753 | Tetrapyrrole (Corrin/Porphyrin) Methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | SAM-dependent methyltransferase. | 0.918 |