STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK62081.1DNA replication protein DnaC, putative; Identified by match to protein family HMM PF01695; Belongs to the DnaA family. (330 aa)    
Predicted Functional Partners:
ABK61642.1
DNA replication protein DnaD; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446.
 
  
 0.970
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.927
ABK60534.1
Conserved hypothetical protein.
  
 
 
 0.720
ABK62193.1
Conserved protein.
  
     0.716
polA
DNA polymerase I, polA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.677
ABK60525.1
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
       0.559
fabH
3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP synthase III) (KAS III); Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase- [...]
       0.559
ABK62468.1
8-oxoguanine-DNA-glycosylase, putative; Identified by match to protein family HMM PF00633; match to protein family HMM PF00730.
  
     0.558
ABK61042.1
Conserved hypothetical protein.
       0.537
ABK61134.1
Single-strand DNA binding protein; Identified by match to protein family HMM PF00436.
 
   
 0.515
Your Current Organism:
Clostridium novyi
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.