STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK60962.1Rubrerythrin; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915. (196 aa)    
Predicted Functional Partners:
ABK62180.1
Flavodoxin, putative; Identified by match to protein family HMM PF00258; match to protein family HMM PF00753.
 
  
 0.593
ABK61818.1
Rubredoxin; Identified by match to protein family HMM PF00301.
  
  
 0.570
ABK61375.1
Conserved hypothetical protein.
       0.552
ABK61210.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.519
ABK60500.1
Hydrogenase (Fe) large chain; Identified by match to protein family HMM PF00037; match to protein family HMM PF02256; match to protein family HMM PF02906.
    
 0.496
Your Current Organism:
Clostridium novyi
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.