STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK60847.1Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277. (352 aa)    
Predicted Functional Partners:
ABK61236.1
Signal transduction protein containing diguanilate cyclase/phosphodiesterase domain; Identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254.
 
 0.859
ABK60669.1
Diguanylate cyclase/phosphodiesterase domain 2; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 0.787
nifL
Nitrogen fixation positive activator, putative; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
   
 0.725
ABK60539.1
Diguanylate cyclase/phosphodiesterase domain 2; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
   
 0.713
ABK60506.1
EAL domain protein, putative; Identified by match to protein family HMM PF00563.
 
 
 0.712
ABK60981.1
Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
   
 0.699
ABK60459.1
Conserved membrane protein (rhomboid family); Identified by match to protein family HMM PF01694.
  
    0.596
ABK61367.1
GGDEF domain protein, putative; Identified by match to protein family HMM PF00515; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 0.556
ABK61226.1
Probable enzyme with TIM-barrel fold.
       0.538
pepF
Identified by match to protein family HMM PF01432; match to protein family HMM TIGR00181.
       0.526
Your Current Organism:
Clostridium novyi
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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