STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK62219.1ABC transporter, permease protein, cysTW family, putative; Identified by match to protein family HMM PF00528. (269 aa)    
Predicted Functional Partners:
ABK60731.1
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.986
ABK61152.1
ABC transporter substrate-binding protein.
 
  
 0.935
ABK60997.1
ABC transporter substrate-binding protein.
 
  
 0.904
ABK61982.1
Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.749
ABK61997.1
TPR repeats containing protein; Identified by match to protein family HMM PF00515.
       0.688
ABK60648.1
Lipoprotein, putative.
  
  
 0.627
ABK60546.1
CoA-substrate-specific enzyme activase domain protein; Identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241.
       0.490
Your Current Organism:
Clostridium novyi
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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