node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK60960.1 | ABK61127.1 | NT01CX_2214 | NT01CX_2211 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | 0.775 |
ABK60960.1 | ffh | NT01CX_2214 | NT01CX_2213 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.965 |
ABK60960.1 | rimM | NT01CX_2214 | NT01CX_2210 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.714 |
ABK60960.1 | rplS | NT01CX_2214 | NT01CX_2208 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.556 |
ABK60960.1 | rpmF | NT01CX_2214 | NT01CX_2222 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. | 0.480 |
ABK60960.1 | rpsP | NT01CX_2214 | NT01CX_2212 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.816 |
ABK61127.1 | ABK60960.1 | NT01CX_2211 | NT01CX_2214 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.775 |
ABK61127.1 | ABK62139.1 | NT01CX_2211 | NT01CX_0872 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | R3H domain protein; Identified by match to protein family HMM PF01424. | 0.966 |
ABK61127.1 | ffh | NT01CX_2211 | NT01CX_2213 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.778 |
ABK61127.1 | rimM | NT01CX_2211 | NT01CX_2210 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.881 |
ABK61127.1 | rplS | NT01CX_2211 | NT01CX_2208 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.927 |
ABK61127.1 | rplT | NT01CX_2211 | NT01CX_1763 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.769 |
ABK61127.1 | rpmF | NT01CX_2211 | NT01CX_2222 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. | 0.774 |
ABK61127.1 | rpsO | NT01CX_2211 | NT01CX_2131 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.769 |
ABK61127.1 | rpsP | NT01CX_2211 | NT01CX_2212 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.979 |
ABK61127.1 | rpsT | NT01CX_2211 | NT01CX_0065 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.769 |
ABK62139.1 | ABK61127.1 | NT01CX_0872 | NT01CX_2211 | R3H domain protein; Identified by match to protein family HMM PF01424. | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | 0.966 |
ffh | ABK60960.1 | NT01CX_2213 | NT01CX_2214 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.965 |
ffh | ABK61127.1 | NT01CX_2213 | NT01CX_2211 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | 0.778 |
ffh | rimM | NT01CX_2213 | NT01CX_2210 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.736 |