node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK60567.1 | ABK60815.1 | NT01CX_2137 | NT01CX_2279 | Conserved hypothetical protein; Identified by match to protein family HMM PF04296. | Hypothetical UPF0297 protein; Belongs to the UPF0297 family. | 0.496 |
ABK60567.1 | ABK60960.1 | NT01CX_2137 | NT01CX_2214 | Conserved hypothetical protein; Identified by match to protein family HMM PF04296. | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.657 |
ABK60567.1 | rimM | NT01CX_2137 | NT01CX_2210 | Conserved hypothetical protein; Identified by match to protein family HMM PF04296. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.458 |
ABK60815.1 | ABK60567.1 | NT01CX_2279 | NT01CX_2137 | Hypothetical UPF0297 protein; Belongs to the UPF0297 family. | Conserved hypothetical protein; Identified by match to protein family HMM PF04296. | 0.496 |
ABK60815.1 | ABK60960.1 | NT01CX_2279 | NT01CX_2214 | Hypothetical UPF0297 protein; Belongs to the UPF0297 family. | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.720 |
ABK60815.1 | ABK62014.1 | NT01CX_2279 | NT01CX_1977 | Hypothetical UPF0297 protein; Belongs to the UPF0297 family. | Putative alkaline shock protein; Identified by match to protein family HMM PF03780. | 0.435 |
ABK60960.1 | ABK60567.1 | NT01CX_2214 | NT01CX_2137 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Conserved hypothetical protein; Identified by match to protein family HMM PF04296. | 0.657 |
ABK60960.1 | ABK60815.1 | NT01CX_2214 | NT01CX_2279 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical UPF0297 protein; Belongs to the UPF0297 family. | 0.720 |
ABK60960.1 | ABK61127.1 | NT01CX_2214 | NT01CX_2211 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | 0.775 |
ABK60960.1 | ABK62014.1 | NT01CX_2214 | NT01CX_1977 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Putative alkaline shock protein; Identified by match to protein family HMM PF03780. | 0.648 |
ABK60960.1 | ffh | NT01CX_2214 | NT01CX_2213 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.965 |
ABK60960.1 | ftsY | NT01CX_2214 | NT01CX_2215 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.755 |
ABK60960.1 | rimM | NT01CX_2214 | NT01CX_2210 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.714 |
ABK60960.1 | rpsP | NT01CX_2214 | NT01CX_2212 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.816 |
ABK60960.1 | smc | NT01CX_2214 | NT01CX_2216 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.676 |
ABK60960.1 | trmD | NT01CX_2214 | NT01CX_2209 | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.661 |
ABK61127.1 | ABK60960.1 | NT01CX_2211 | NT01CX_2214 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Gene regulatory 13K protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.775 |
ABK61127.1 | ffh | NT01CX_2211 | NT01CX_2213 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.778 |
ABK61127.1 | ftsY | NT01CX_2211 | NT01CX_2215 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.657 |
ABK61127.1 | rimM | NT01CX_2211 | NT01CX_2210 | Hypothetical UPF0109 protein-related protein; Belongs to the UPF0109 family. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.881 |