Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK60926.1 | ABK62154.1 | NT01CX_2240 | NT01CX_2242 | PP2C phosphatase family, putative; Identified by match to protein family HMM PF00481. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.986 |
| ABK60926.1 | def-2 | NT01CX_2240 | NT01CX_2245 | PP2C phosphatase family, putative; Identified by match to protein family HMM PF00481. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.701 |
| ABK60926.1 | fmt | NT01CX_2240 | NT01CX_2244 | PP2C phosphatase family, putative; Identified by match to protein family HMM PF00481. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.926 |
| ABK60926.1 | priA | NT01CX_2240 | NT01CX_2246 | PP2C phosphatase family, putative; Identified by match to protein family HMM PF00481. | Primosomal protein N`; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.750 |
| ABK61675.1 | ABK62154.1 | NT01CX_2109 | NT01CX_2242 | 5-methyltetrahydrofolate--homocysteine methyltransferase, putative; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.627 |
| ABK61675.1 | fmt | NT01CX_2109 | NT01CX_2244 | 5-methyltetrahydrofolate--homocysteine methyltransferase, putative; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.924 |
| ABK61675.1 | folD | NT01CX_2109 | NT01CX_1979 | 5-methyltetrahydrofolate--homocysteine methyltransferase, putative; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.738 |
| ABK61675.1 | glyA | NT01CX_2109 | NT01CX_1853 | 5-methyltetrahydrofolate--homocysteine methyltransferase, putative; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.954 |
| ABK61675.1 | metG | NT01CX_2109 | NT01CX_0697 | 5-methyltetrahydrofolate--homocysteine methyltransferase, putative; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.929 |
| ABK61675.1 | priA | NT01CX_2109 | NT01CX_2246 | 5-methyltetrahydrofolate--homocysteine methyltransferase, putative; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | Primosomal protein N`; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.470 |
| ABK61675.1 | purN | NT01CX_2109 | NT01CX_2420 | 5-methyltetrahydrofolate--homocysteine methyltransferase, putative; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.924 |
| ABK61675.1 | thyX | NT01CX_2109 | NT01CX_1095 | 5-methyltetrahydrofolate--homocysteine methyltransferase, putative; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.913 |
| ABK62154.1 | ABK60926.1 | NT01CX_2242 | NT01CX_2240 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | PP2C phosphatase family, putative; Identified by match to protein family HMM PF00481. | 0.986 |
| ABK62154.1 | ABK61675.1 | NT01CX_2242 | NT01CX_2109 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 5-methyltetrahydrofolate--homocysteine methyltransferase, putative; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | 0.627 |
| ABK62154.1 | def-2 | NT01CX_2242 | NT01CX_2245 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.852 |
| ABK62154.1 | fmt | NT01CX_2242 | NT01CX_2244 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.999 |
| ABK62154.1 | folD | NT01CX_2242 | NT01CX_1979 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.739 |
| ABK62154.1 | metG | NT01CX_2242 | NT01CX_0697 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.724 |
| ABK62154.1 | priA | NT01CX_2242 | NT01CX_2246 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Primosomal protein N`; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.804 |
| ABK62154.1 | purN | NT01CX_2242 | NT01CX_2420 | Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.474 |
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