STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102377337FYVE, RhoGEF and PH domain-containing protein 5. (395 aa)    
Predicted Functional Partners:
FGD5
FYVE, RhoGEF and PH domain-containing protein 5.
 
     0.928
TIAM2
T-lymphoma invasion and metastasis-inducing protein 2 isoform X1.
     
 0.548
LANCL3
LOW QUALITY PROTEIN: lanC-like protein 3.
      
 0.539
KCNJ4
LOW QUALITY PROTEIN: inward rectifier potassium channel 4.
      
 0.539
SMDT1
Essential MCU regulator, mitochondrial.
     
 0.500
MCUB
Calcium uniporter regulatory subunit MCUb, mitochondrial.
   
 
 0.414
MCU
Calcium uniporter protein, mitochondrial.
   
 
 0.414
Your Current Organism:
Alligator sinensis
NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494
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